The problem may be that your way too close to that tip with your PC and everything else. We have successfully integrated the chinese plasma cutters into CandCNC packages as well as a Gecko 540 system only to find out later they were unreliable. They will work for a while...maybe a long while but you will eventually be let down. If you are frying parallel ports or serial ports your getting a grounding issue most likely from your PC cabinet. To make these hi-frequency systems work you need major sheilding. You need to sheild your wires and tie your sheilding into the body of the motor then to a star ground on the table. You need to ground every part of the Z axis and moving isolated components to the star ground. You need to ground the sheetmetal of the plasma cutter to a seperate ground in the ground and then run everything else to a ground in the ground far away from the plasma cutter body in ground....ground. Even then you can get issues running the cheap chinese unsheilded lead anywhere near your wires. The noise will transfer to any electrical part. Many have tried and out of frusteration sold their chi-com unit in favor of a better suited plasma cutter. You have taken it this far with your mechanics and eletronics only to cheap out on the actual cutting tool. My advice is ditch the problematic cutter and get one that wont make you pull your hair out today or even a year from now.
We have a chicom unit fire in our shop and 30 feet away behing a brick wall the monitors kick off. We have had the most hi-freq units from thermaldyne integrated and not do this.
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