Re: Slaved Y axis losing steps
Looking at the fairly large design, but somewhat narrow rails/beams, I would hazard you have some "racking" occurring.
It only needs a couple of thou of give at any point to have this magnified at other points, causing missed steps under load.
Try slowing the speed down, and maybe bracing temporarily while testing, such as along the front at the top, to see if that makes any difference.
cheers, Ian
It's rumoured that everytime someone buys a TB6560 based board, an engineer cries!