Ah darn! When I watched your gib-adjusting video I thought "ohhhh, that's how you do it... that makes sense". Some time in the past I too decided I might be able to get some more accuracy by adjusting my gibs. I went through and tightened them all while the machine was turned off. I got them to the point where I could turn the screws manually without too much trouble. Again, since there's no instruction from Novakon I was basically "winging it". After that, I turned the machine back on and moved the table around. Everything looked OK as far as I could tell. Then I went to set the X/Y zero point and found that the motors didn't have the guts* to overcome the gib stiction when doing single steps (0.002 mm steps). What a pain. I've tried messing with the servo drivers, but, again, without any kind of guide to work with** (and no previous experience) I was left with "winging it". I think I tuned them to something better than they were originally (less singing at least) but it would have been nice to have some instruction. I was not able to solve the stiction problem so I ended up loosening all the gib screws.
I don't know about yours, but ALMOST EVERY setting in my servo drivers was set to the default value. As far as I can remember, every setting other than the step multiplier values was literally set to the default. It seems to me that it would be exceptionally unlikely that the optimum parameters for the Z axis and the X axis would somehow match. It's even less likely that the Y would match the X.
* a catchall term because I don't know what the real problem was
** the manual does attempt to convey information, but it doesn't do a very good job - I believe the details were lost in translation