Hi Scott,
Curious... I do not see any 25 ohm resistor. Pins 11 and 14 of TB6560 are grounded with 2 x R51 in parallel (= 0.25 ohms) for a 2A intensity. Are you sure to not confuse. Otherwise, send a picture. The smoke near the connector may be comes from these resistors. Check if there is no short circuit (PCB, wiring...).
Rak