Designing your first clock can be pretty daunting, so let’s break it down a bit. The two things every mechanical clock needs are a driving force and some form of escapement. I use Weights for the driving force because they deliver a constant force, which is important as the more constant the force the more accurate the clock. There are lots of escapements you could use, and all have advantages and disadvantages, take a look here
http://www.angelfire.com/ut/horology/escapement.html
The deadlock escapement is a good one to start with. To keep your escapement “ticking” at a regular rate you need to attach it to a pendulum. The clocks I build I use a 2 second one, which means it needs 2 seconds to move from left to right and back again. Then it is just a question of gearing down from the escapement wheel, so if it turns at 1rpm it obviously needs to turn 60 times to turn the minute hand once, e.g. 60-1 then you need to slow down the minute hand 12 times to run the hour hand e.g. 12-1. But like all things the theory sounds easy. The best tip I can give you is to study other peoples clocks, see here
http://www.woodenclocks.co.uk/
There is nothing like building your own clock to find out about what makes it tick, and to explain everything you need to know to build a clock would fill up sides, as to books I am sorry but I do not know of anything definitive and especially in respect of wooden clocks. Maybe you could be more specific.